This folder contains the datasets generated using the mcslibrary package along
with some useful R scripts to analyse the data and generate plots.

The datasets are stored on the following folders:
- iAF1260_ethanol: Anaerobic ethanol production on Escherichia coli
- iMM904_succinate: Aerobic succinic acid production on Saccharomyces cerevisiae.
- ecoli_core_itacon: Itaconic acid production on Escherichia coli (core model)

Each folder contains the following files:
-*MetricsOverview*.csv - Dataframe with useful productivity metrics
-*pFBA*.csv - Matrix with the pFBA flux distributions (maximizing biomass)
-*[lowerLim/upperLim]* - Flux ranges (upper or lower) for each mutant
-RxFrequency/SubsetRxFrequency - Reaction/subset counts within the knockouts

These files contain prefixes to identify the algorithm/environmental conditions
to which they belong. Additionally, these folders will contain plain .txt files
with the solutions themselves.

The R scripts should work with any machine, given the packages used are installed
and the cloudPath variable is pointing toward the root folder containing this
file. These can be located in the ASAP/Scripts folder